miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|262515860|gb|FP051459.1|FP051459 AACAAAACCTATCACTCCTCCCTCCCTTTGGATTCGCCGGCGGCGGTTTCCTTTTCTATTCTCCTCCATTTTGAGATGGA
CTCCCGCCGGCGATCGACCTCCAAAGCCACCACCGCCCCCCCACCACCACCACACATGAAAATGAAAATGGGAGTGGGAG
TGGGAGTGGGTCTACATCAACATCATAATGACAAAGTGCTCAAGGCCTCAGACGCTTTGCCACTCCCACTTTACCTCACC
AATGCTGTCTTCTTCACTCTGTTTTTCTCTGTGGTCTACTTCTTGCTCACTCGCTGGCGTGAGAAGATTCGTAACTCCAC
CCCTCTTCATGTCCTTAACTTGTCTGAGATAGTCGCCATCTTCGCCTTCATCGCTTCCTTCATCTACCTCCTTGGTTTCT
TCGGAATCGATTTTGTCCAGTCGATTCTTCGACCTTCCACTGATCTCTGGCCTAACGAGGACGAAATCGACGATGCCCAG
AACCCAGACGAAATCGTTCTTAAAGAAGACTCTCGTAAAGTCCCTTGTGGTGCTGGCCTCGATTGCTCACCTCCTCAGAT
CGTAAACAAGGAAATTGTCTCTCCTCCTTCCCTGGTACCTACGGTATTGAGCGAAGAGGATGAGGAGGTCATCAAATCAG
TCGTGAAAGGAT




Most similar to sp|O64966|HMDH1_GOSHI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
          Length = 585

 Score =  165 bits (418), Expect = 2e-40
 Identities = 96/161 (59%), Positives = 108/161 (67%), Gaps = 7/161 (4%)
 Frame = +1

Query: 190 DKVLKASDALPLPLYLTNAVFFTLFFSVVYFLLTRWREKIRNSTPLHVLNLSEIVXXXXX 369
           D   KASDALPLPLYLTNAVFFTLFFS VYFLL RWREKIR+STPLHV+  SEIV     
Sbjct: 25  DDSTKASDALPLPLYLTNAVFFTLFFSAVYFLLCRWREKIRSSTPLHVVTFSEIVAILAS 84

Query: 370 XXXXXYLLGFFGIDFVQS-ILRPSTDLWPNEDEIDDAQNPDEIVLKEDSRKVPCGAGLDC 546
                YLLGFFGIDFVQS +LRPS D+W  E   DD    + ++  ED+R VPCG  LD 
Sbjct: 85  VASFIYLLGFFGIDFVQSLVLRPSADVWATE---DDEVESEVLLRNEDARHVPCGQALDR 141

Query: 547 S------PPQIVNKEIVSPPSLVPTVLSEEDEEVIKSVVKG 651
           S      P  IV  E V     V TV++EEDEE+I+SVV G
Sbjct: 142 SIRSLQPPEPIVTAEKVFDEMPV-TVMTEEDEEIIRSVVCG 181